TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= query SelS_C.intestinalis.fa
         (204 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    36   0.016
gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    35   0.036
gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    34   0.062
gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   0.89 
gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   1.5  
gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   2.6  
gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   3.4  
gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   3.4  
gb|CM000625.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   4.4  
gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   4.4  
gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   5.8  
gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   5.8  
gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   7.5  
gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   7.5  
gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    27   7.5  

>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
              sequence
          Length = 2535400

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 13/129 (10%)
 Frame = +3

Query: 65     EKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE 124
              +K       + KT  +       ++   R      AR+K++ +   AA +  ++ RE +E
Sbjct: 212889 QKQQDQELAKAKTTTEQAVIAAAKEEAEREAQKNAARRKIEQQ---AAEQARQKAREWDE 213059

Query: 125    QKRMQKINDHDALKAGKTQSKTSKKLD----------QK---PDPNQATQSHIKRNKESK 171
              +++   ++   +LK  KT+ K +  LD          QK   PDP +A     K+   S 
Sbjct: 213060 KQKKMSVSSTQSLK--KTEPKPAPTLDLSSFFPTPAPQKEAAPDPAKAKVEAPKKKAPST 213233

Query: 172    PLRSSDFSP 180
              P   S FSP
Sbjct: 213234 PSFGSFFSP 213260



 Score = 30.4 bits (67), Expect = 0.68
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = +2

Query: 81      DTENMTPEQVEARSVAMERARK-KLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKA 139
               +  N+  ++ + R+   ERA   ++    +  ARE   ++   E +   ++  ++ A   
Sbjct: 1292081 NAHNVLGKKSKKRNKMSERASNPEMTISLNPNARESPLKIESTEAKAAGEEGTENAATAE 1292260

Query: 140     GKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFS 179
                K  S+T+K  D  P P    Q   KR  E+  LR  DFS
Sbjct: 1292261 QKNASETNKIADT-PKPTHCAQDDGKREIEAAALREWDFS 1292377



 Score = 26.9 bits (58), Expect = 7.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 56      AAMFVWTNIEKSVKNLFGRR 75
               A+ F W  I+ S+KN FGRR
Sbjct: 2413381 ASFFRWFQIKHSIKNHFGRR 2413440


>gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 21, whole genome shotgun
              sequence
          Length = 662217

 Score = 34.7 bits (78), Expect = 0.036
 Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
 Frame = -2

Query: 59     FVWTNIEKSVKNLFGRRKTYYD-DTENMTPEQVEARSVAMERARKKLQDRHD-----AAA 112
              F+ ++ E++     G  K++    T ++  ++  ++ +A   ++ K+ D  D       A
Sbjct: 562805 FLDSSDEETEDESLGMSKSFSKFKTRDLPSDKESSQWLAKTNSKSKIDDESDDDSEAPNA 562626

Query: 113    REHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESK 171
               + + + ++ +E+ + +K  D D+ K  +T+SK+ K    K D N   ++  ++NKE K
Sbjct: 562625 GDKKLKKKKNKEKDKEKKKKDKDSKKKKETESKSKKTKVTKED-NSDNETQKRKNKEVK 562452



 Score = 27.7 bits (60), Expect = 4.4
 Identities = 21/124 (16%), Positives = 48/124 (38%)
 Frame = -2

Query: 73     GRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKIN 132
              G   T+ +D+ N    Q +    +   +  + +D HD     H +     ++   +  I+
Sbjct: 133337 GNSGTHPNDSNNNNNNQNKNSEPSSPVSSDEQRDHHDDTHSNHNDHSNSNDDDSSIISIH 133158

Query: 133    DHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWR 192
              +HD +        + K+ ++  +    T +    + ++      D S LG    +S+   
Sbjct: 133157 NHDRI------DNSPKRREETTERVTTTTTEDDDDNDNNEPGEDDNSILGIRDDSSSTTN 132996

Query: 193    PGNS 196
              P +S
Sbjct: 132995 PAHS 132984



 Score = 27.3 bits (59), Expect = 5.8
 Identities = 50/216 (23%), Positives = 70/216 (32%), Gaps = 43/216 (19%)
 Frame = +2

Query: 10     GDPNTAGSAGNQGPLINENPYVMMSVFNQGLAFLQAYGWFLLFGFVAAMFVWTNIEKSVK 69
              GDPN  G   + GP    + Y        G      YG     G   A    + +++ + 
Sbjct: 242867 GDPNMPGGGNSNGPHPPSSRYDAPLEERSG-----PYGGNAASGGPIAPRRGSGVDRKLS 243031

Query: 70     NLFGRRKTYYD------DTENMTPEQVEA-------------RSVAMERARKKLQDRHDA 110
                        D      D +N+ P  V A             R V   RARK  Q R  A
Sbjct: 243032 RASAESSRADDDGDTEGDDDNIVPGAVTARLKTYIKPRTPSTREVLDRRARKNAQSRARA 243211

Query: 111    A----------AREHEERLRE-----QEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPD 155
              A           +  +ER  E     Q+ + R Q+ ND    +A + + +  + L  KPD
Sbjct: 243212 AKLRLRIAEIEMKPEDERTEEEIHLWQQYESRRQRKNDRSRERALEKKEEIDRIL-AKPD 243388

Query: 156    PN---------QATQSHIKRNKESKPLRSSDFSPLG 182
                         +   S  KR  E   LR      LG
Sbjct: 243389 KKRTKIERQFLETALSAKKRKNEGDRLRRQRLKELG 243496


>gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 7, whole genome shotgun
              sequence
          Length = 1029019

 Score = 33.9 bits (76), Expect = 0.062
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
 Frame = +2

Query: 65     EKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE 124
              +K  K    R++   ++ E    E+ EA+    ER R K +       ++  ERL +Q+ 
Sbjct: 286841 KKKKKKERERQQKMQEEQERREQEEREAQ----ERERLKREKE-----QKERERLLKQKR 286993

Query: 125    QKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSH---------IKRNKESK--PL 173
              ++   ++ + + L   K Q +   + DQK    Q TQS          + R K S   P 
Sbjct: 286994 ERDKHELAEREKLLEAKRQDRDRHERDQKHRLGQETQSASPLSPTNSVLLRRKPSTNVPA 287173

Query: 174    RSSDFSPLGGGPSNSARW--RPGNSRPSA 200
                S FS      S + RW  +P  S  +A
Sbjct: 287174 IRSSFSAKSSTLSGNRRWETKPKTSSDAA 287260



 Score = 31.2 bits (69), Expect = 0.40
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = +3

Query: 110    AAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKE 169
              A  R  E+ ++         K +  DA    + Q K S+K  +   P+Q+ Q H K+ KE
Sbjct: 798441 AVVRRSEQPIQSDTSTASRMKESFEDARVNIQEQEKVSRK--RVDSPSQSIQGHQKKTKE 798614

Query: 170    SKPLRSSDFSPLGGGP 185
               + L++S   P+   P
Sbjct: 798615 GRLLKASS-QPIARSP 798659



 Score = 27.3 bits (59), Expect = 5.8
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -1

Query: 83     ENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKT 142
              E     +VEA  +A E+ARK +Q+  +A    + E  +E EE  R++     D  +A  +
Sbjct: 110077 EEAEARRVEAERMAEEKARKAIQEFREA----NVEEKKEGEESGRVE-----DDREANMS 109925

Query: 143    QSKTSKKLDQKPDPN 157
               + +   L  K D N
Sbjct: 109924 VAPSLATLSVKHDVN 109880


>gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 19, whole genome
             shotgun sequence
          Length = 690427

 Score = 30.0 bits (66), Expect = 0.89
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
 Frame = +1

Query: 87    PEQVEARSVAMER--ARKKLQDRHDAAAREHEERLREQEEQKRMQK-----------IND 133
             P Q     V MER  A+K+  + H   A    +R + +E   R+ K             D
Sbjct: 63841 PGQAAFYRVMMERDVAQKRAHNYH---AEVRSQRAKIRELTARLHKSVALVEVSYNGTGD 64011

Query: 134   HDAL-KAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLR 174
              D   K GKT+ K + K    PDP Q  Q  +K+    +PLR
Sbjct: 64012 EDGTTKTGKTKKKKANKQKVSPDPQQ--QQQVKK----RPLR 64119


>gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 26, whole genome shotgun
              sequence
          Length = 441226

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
 Frame = -2

Query: 89     QVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSK 148
              +VE +  A E   K++Q R    A +      +QE+   +Q      +L+A    S+++ 
Sbjct: 235113 RVEQKEAAAEE--KRIQRRSQLQALKAAVTTIQQEKDDEIQS-----SLQAAAQHSQSNI 234955

Query: 149    KLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARW---RPGNSRPSAGGUG 204
              ++ Q+P     ++++   +  + P R+S  S         ARW     G  +   GG G
Sbjct: 234954 RILQRPAAPDTSETNRSVDSRNTPSRASGPSTNVSNSGAGARWVRASRGGDQHQRGGRG 234778


>gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 4, whole genome shotgun
               sequence
          Length = 1360148

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 90      VEARSVAMERARKKLQDRHDAA-AREHEERLREQEE 124
               VEA  +A  RARK+ + + DA  AR+  ER R +E+
Sbjct: 1159715 VEAADIARNRARKERKRQMDAIYARKRRERERSEED 1159608



 Score = 28.1 bits (61), Expect = 3.4
 Identities = 23/67 (34%), Positives = 30/67 (44%)
 Frame = +1

Query: 138    KAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNSR 197
              KA  +   T+ K ++ PD     Q H  R+ E +P    D+ P      NS  WR G   
Sbjct: 388687 KAPGSSLPTAPK-ERAPDDEGRFQRHSTRH-EDRP----DYEPSRSESDNS--WRRGGGG 388842

Query: 198    PSAGGUG 204
              PSAG  G
Sbjct: 388843 PSAGDRG 388863



 Score = 27.7 bits (60), Expect = 4.4
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 124    EQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLG 182
              + +R +  +  + L    TQS  S   D +P P+ +T  H  + +    +    F+PLG
Sbjct: 984830 KSERREDSSSSEKLPTWITQSTISNAFDMRPTPSSSTSFHS*QTQSLVCILPLFFAPLG 985006


>gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 16, whole genome
             shotgun sequence
          Length = 764225

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
 Frame = -1

Query: 63    NIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQ 122
             ++E  +K L     +Y+D  E          +V+M   ++K +DR+   A+   E L+  
Sbjct: 95549 DLESQLKEL-----SYHDQLEEKIRHSTTQTTVSMIEKQEKAEDRNVETAQRDSEALK-- 95391

Query: 123   EEQKRMQKINDHDAL----KAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSD 177
                     IN H+A     +   ++S  +      P P + +     RN +S   R+ D
Sbjct: 95390 ------TSINSHEATLHSPREASSRSFLAVATASSPHPLRTS----NRNSQSPSFRNRD 95244


>gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 9, whole genome shotgun
              sequence
          Length = 1002813

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 91     EARSVAMERARKKLQDRHDAAAREHEERLREQE--EQKRMQK 130
              EAR    E  RKK + R +  A+E E R  E E  E++R +K
Sbjct: 917504 EARRKEEEEKRKKDEARREREAKEEERRRAEDERMEEERRKK 917379



 Score = 27.7 bits (60), Expect = 4.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 141    KTQSKTSKKLDQKPDPNQATQSHIKRNKESKPL 173
              + +  T ++L Q+    QAT  H +  +ESKP+
Sbjct: 920288 RQEENTVRRLTQESKQKQATTDHHRTGRESKPI 920386


>gb|CM000625.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 23, whole genome shotgun
              sequence
          Length = 512847

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 113    REHEERLREQEEQKRMQKI--NDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKES 170
              +EH + LREQ + +R++ +  +   + K GK  ++    LD  P  +    S ++    S
Sbjct: 282034 KEHVDFLREQTQPRRVEVVWGSPSRSQKVGKAGTEK*SILDHAPFRSPTPNS*VEAGSLS 282213

Query: 171    KPLRSSDFSPLGGGPSNSAR 190
               P  S     L   P+  AR
Sbjct: 282214 DPNVSCRSKSLSWWPTKLAR 282273


>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome
             shotgun sequence
          Length = 976485

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 26/96 (27%), Positives = 44/96 (45%)
 Frame = -1

Query: 89    QVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSK 148
             + E      ER R+++Q   +       ER R +EEQ+  Q+  +  A K    Q+  +K
Sbjct: 41733 ETEREDKEAERERRRIQQLENLDPEVRAERERVREEQR--QETEERRAKKRQAEQALANK 41560

Query: 149   KLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGG 184
                +K D  +A ++  +   E    +SS F+ L GG
Sbjct: 41559 --HRKLDKEEARKAQAR--LEYLLQQSSIFAKLQGG 41464


>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
              sequence
          Length = 683011

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 72     FGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE 124
              FGR  T +       PE ++       + RKKL D+    AR   ERL E  +
Sbjct: 440418 FGRENTNHFVGNKAYPETLDICQPKYNKLRKKLADQGRKTARWIHERLLESPD 440576



 Score = 26.6 bits (57), Expect = 9.8
 Identities = 13/64 (20%), Positives = 28/64 (43%)
 Frame = +3

Query: 122    QEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPL 181
              Q++   +++ +    L     ++   +++DQ+      TQ H  R++ S   R+ D    
Sbjct: 481539 QDQPIAVRRSSTQSCLDRESIEANVQQQIDQQQKGVAVTQKHQTRHRPSLAERAEDLGSY 481718

Query: 182    GGGP 185
              G  P
Sbjct: 481719 GSDP 481730


>gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun
              sequence
          Length = 1098047

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 22/107 (20%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
 Frame = -1

Query: 74     RRKTYYDDTENMTPEQVEARSVAMERA---RKKLQDRHDAAAREHEERLREQE-EQKRMQ 129
              ++ +Y   T N      +A   A ++A   +K ++ R+   A++  E  R+++ EQKR++
Sbjct: 654371 KKPSYAKPTLNPMFVNPKATLTAAQKAADSKKLVETRNVETAKKKAEAKRQKKIEQKRVE 654192

Query: 130    KINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSS 176
              +     A+     QSK+  +   +   +Q  +   KR ++++ ++ +
Sbjct: 654191 EEQKRQAVSRDLKQSKSISQEQTRLRKDQDGKDFEKRRRKAEQVKEA 654051



 Score = 26.9 bits (58), Expect = 7.5
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +2

Query: 110    AAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKE 169
              ++ R +++    +       + ++  A +A   + KT       P+   +++   K    
Sbjct: 988670 SSGRNNKQLRHSKRNSDSSSRNSNRPAKRANPHKQKTPLSRRSNPNSKPSSRRGNKSTHP 988849

Query: 170    SKPLRSSDFSPLGGG-PSNSARWRPGNS 196
               KP  ++ ++P     P N   WRPG S
Sbjct: 988850 YKPPSTTAYNPNKPK*PPNKRAWRPGTS 988933


>gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 27, whole genome shotgun
              sequence
          Length = 404298

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
 Frame = -1

Query: 65     EKSVKNLFGRRKTYYDDTENMTPEQVE---ARSVAMERARKKLQDRHDAAAREHEERLRE 121
              +KS      RR+    + +N   + +    + S +    RKK + R       H+ER R 
Sbjct: 111039 KKSKHRKTRRRRRRSSEKDNSVVDDISLSLSDSTSSSARRKKRRQR-------HKER-RR 110884

Query: 122    QEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESK 171
              +E+Q      +D  +L       ++ K+  +  D    +Q H  R  + +
Sbjct: 110883 KEKQTVHSSTDDEQSLSTADRDRRSRKRRRKDRDDESTSQRHHSRQNKRR 110734


>gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun
              sequence
          Length = 829358

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 19/106 (17%), Positives = 43/106 (40%)
 Frame = +2

Query: 54     FVAAMFVWTNIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAR 113
              F++ +  +   EK+V+++F  +  +             ARS A++   KKL      +A 
Sbjct: 806696 FLSHLRAYPTKEKAVRHIFSAKALHLGHV---------ARSFALKEPPKKLGTNSSQSAA 806848

Query: 114    EHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQA 159
                E+  R++         ++ +    GK     S+  +++   N +
Sbjct: 806849 NQEDDSRKRNGSMAFTIFDEDETAPGGKGYQSKSRSPNKRTKTNDS 806986


>gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun
              sequence
          Length = 1007773

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 3/136 (2%)
 Frame = -3

Query: 62     TNIEKSVKNLFGRRKTYYDDTEN---MTPEQVEARSVAMERARKKLQDRHDAAAREHEER 118
              T  E  ++ L+ RR+   +   N      +   A  VA     +KL +  D   R+  ER
Sbjct: 530570 TLCEAELQELWERRQRRGNRNRNGPATDEDHSTATFVADADELRKLTEEADMDVRDVLER 530391

Query: 119    LREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDF 178
              LR + E        DH++         T  +  Q  +P +          ++ P+R+S  
Sbjct: 530390 LRREGEADTTVSDEDHES-------PVTHSRQVQFAEPVRV---------DASPVRTSS- 530262

Query: 179    SPLGGGPSNSARWRPG 194
              SP G  PS   R  PG
Sbjct: 530261 SPAGAPPSPLPRSDPG 530214



 Score = 26.6 bits (57), Expect = 9.8
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
 Frame = -1

Query: 105    QDRHDAAAREHEERLREQEEQK-RMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSH 163
              +D H   A   E R + +  Q+ R  K    +A + G+T  ++     +K DPN      
Sbjct: 569803 RDGHYGPASLEESRKKNRRGQRARKAKALAVEARQQGRTLDRSINWRPKKMDPNDHQGPE 569624

Query: 164    IKRNKESKPLRSSDFSPLGGGPSNSARWRP 193
                    S+P   S  S     P ++A   P
Sbjct: 569623 TSIPSRSRPGHQSQHSQPTPTPDDTAHLHP 569534


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.312    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,128,133
Number of Sequences: 31
Number of extensions: 65283
Number of successful extensions: 407
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 159
length of query: 204
length of database: 7,911,228
effective HSP length: 93
effective length of query: 111
effective length of database: 7,908,345
effective search space: 877826295
effective search space used: 877826295
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)