TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= query SelS_C.intestinalis.fa
(204 letters)
Database: P.tricornutum/genome.fa
31 sequences; 23,733,684 total letters
Searching...............................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 36 0.016
gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 35 0.036
gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 34 0.062
gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 30 0.89
gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 1.5
gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 2.6
gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 3.4
gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 3.4
gb|CM000625.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 4.4
gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 28 4.4
gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 5.8
gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 5.8
gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 7.5
gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 7.5
gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 7.5
>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
sequence
Length = 2535400
Score = 35.8 bits (81), Expect = 0.016
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 13/129 (10%)
Frame = +3
Query: 65 EKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE 124
+K + KT + ++ R AR+K++ + AA + ++ RE +E
Sbjct: 212889 QKQQDQELAKAKTTTEQAVIAAAKEEAEREAQKNAARRKIEQQ---AAEQARQKAREWDE 213059
Query: 125 QKRMQKINDHDALKAGKTQSKTSKKLD----------QK---PDPNQATQSHIKRNKESK 171
+++ ++ +LK KT+ K + LD QK PDP +A K+ S
Sbjct: 213060 KQKKMSVSSTQSLK--KTEPKPAPTLDLSSFFPTPAPQKEAAPDPAKAKVEAPKKKAPST 213233
Query: 172 PLRSSDFSP 180
P S FSP
Sbjct: 213234 PSFGSFFSP 213260
Score = 30.4 bits (67), Expect = 0.68
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +2
Query: 81 DTENMTPEQVEARSVAMERARK-KLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKA 139
+ N+ ++ + R+ ERA ++ + ARE ++ E + ++ ++ A
Sbjct: 1292081 NAHNVLGKKSKKRNKMSERASNPEMTISLNPNARESPLKIESTEAKAAGEEGTENAATAE 1292260
Query: 140 GKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFS 179
K S+T+K D P P Q KR E+ LR DFS
Sbjct: 1292261 QKNASETNKIADT-PKPTHCAQDDGKREIEAAALREWDFS 1292377
Score = 26.9 bits (58), Expect = 7.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 56 AAMFVWTNIEKSVKNLFGRR 75
A+ F W I+ S+KN FGRR
Sbjct: 2413381 ASFFRWFQIKHSIKNHFGRR 2413440
>gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 21, whole genome shotgun
sequence
Length = 662217
Score = 34.7 bits (78), Expect = 0.036
Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Frame = -2
Query: 59 FVWTNIEKSVKNLFGRRKTYYD-DTENMTPEQVEARSVAMERARKKLQDRHD-----AAA 112
F+ ++ E++ G K++ T ++ ++ ++ +A ++ K+ D D A
Sbjct: 562805 FLDSSDEETEDESLGMSKSFSKFKTRDLPSDKESSQWLAKTNSKSKIDDESDDDSEAPNA 562626
Query: 113 REHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESK 171
+ + + ++ +E+ + +K D D+ K +T+SK+ K K D N ++ ++NKE K
Sbjct: 562625 GDKKLKKKKNKEKDKEKKKKDKDSKKKKETESKSKKTKVTKED-NSDNETQKRKNKEVK 562452
Score = 27.7 bits (60), Expect = 4.4
Identities = 21/124 (16%), Positives = 48/124 (38%)
Frame = -2
Query: 73 GRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKIN 132
G T+ +D+ N Q + + + + +D HD H + ++ + I+
Sbjct: 133337 GNSGTHPNDSNNNNNNQNKNSEPSSPVSSDEQRDHHDDTHSNHNDHSNSNDDDSSIISIH 133158
Query: 133 DHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWR 192
+HD + + K+ ++ + T + + ++ D S LG +S+
Sbjct: 133157 NHDRI------DNSPKRREETTERVTTTTTEDDDDNDNNEPGEDDNSILGIRDDSSSTTN 132996
Query: 193 PGNS 196
P +S
Sbjct: 132995 PAHS 132984
Score = 27.3 bits (59), Expect = 5.8
Identities = 50/216 (23%), Positives = 70/216 (32%), Gaps = 43/216 (19%)
Frame = +2
Query: 10 GDPNTAGSAGNQGPLINENPYVMMSVFNQGLAFLQAYGWFLLFGFVAAMFVWTNIEKSVK 69
GDPN G + GP + Y G YG G A + +++ +
Sbjct: 242867 GDPNMPGGGNSNGPHPPSSRYDAPLEERSG-----PYGGNAASGGPIAPRRGSGVDRKLS 243031
Query: 70 NLFGRRKTYYD------DTENMTPEQVEA-------------RSVAMERARKKLQDRHDA 110
D D +N+ P V A R V RARK Q R A
Sbjct: 243032 RASAESSRADDDGDTEGDDDNIVPGAVTARLKTYIKPRTPSTREVLDRRARKNAQSRARA 243211
Query: 111 A----------AREHEERLRE-----QEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPD 155
A + +ER E Q+ + R Q+ ND +A + + + + L KPD
Sbjct: 243212 AKLRLRIAEIEMKPEDERTEEEIHLWQQYESRRQRKNDRSRERALEKKEEIDRIL-AKPD 243388
Query: 156 PN---------QATQSHIKRNKESKPLRSSDFSPLG 182
+ S KR E LR LG
Sbjct: 243389 KKRTKIERQFLETALSAKKRKNEGDRLRRQRLKELG 243496
>gb|CM000610.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 7, whole genome shotgun
sequence
Length = 1029019
Score = 33.9 bits (76), Expect = 0.062
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Frame = +2
Query: 65 EKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE 124
+K K R++ ++ E E+ EA+ ER R K + ++ ERL +Q+
Sbjct: 286841 KKKKKKERERQQKMQEEQERREQEEREAQ----ERERLKREKE-----QKERERLLKQKR 286993
Query: 125 QKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSH---------IKRNKESK--PL 173
++ ++ + + L K Q + + DQK Q TQS + R K S P
Sbjct: 286994 ERDKHELAEREKLLEAKRQDRDRHERDQKHRLGQETQSASPLSPTNSVLLRRKPSTNVPA 287173
Query: 174 RSSDFSPLGGGPSNSARW--RPGNSRPSA 200
S FS S + RW +P S +A
Sbjct: 287174 IRSSFSAKSSTLSGNRRWETKPKTSSDAA 287260
Score = 31.2 bits (69), Expect = 0.40
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +3
Query: 110 AAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKE 169
A R E+ ++ K + DA + Q K S+K + P+Q+ Q H K+ KE
Sbjct: 798441 AVVRRSEQPIQSDTSTASRMKESFEDARVNIQEQEKVSRK--RVDSPSQSIQGHQKKTKE 798614
Query: 170 SKPLRSSDFSPLGGGP 185
+ L++S P+ P
Sbjct: 798615 GRLLKASS-QPIARSP 798659
Score = 27.3 bits (59), Expect = 5.8
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = -1
Query: 83 ENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKT 142
E +VEA +A E+ARK +Q+ +A + E +E EE R++ D +A +
Sbjct: 110077 EEAEARRVEAERMAEEKARKAIQEFREA----NVEEKKEGEESGRVE-----DDREANMS 109925
Query: 143 QSKTSKKLDQKPDPN 157
+ + L K D N
Sbjct: 109924 VAPSLATLSVKHDVN 109880
>gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 19, whole genome
shotgun sequence
Length = 690427
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Frame = +1
Query: 87 PEQVEARSVAMER--ARKKLQDRHDAAAREHEERLREQEEQKRMQK-----------IND 133
P Q V MER A+K+ + H A +R + +E R+ K D
Sbjct: 63841 PGQAAFYRVMMERDVAQKRAHNYH---AEVRSQRAKIRELTARLHKSVALVEVSYNGTGD 64011
Query: 134 HDAL-KAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLR 174
D K GKT+ K + K PDP Q Q +K+ +PLR
Sbjct: 64012 EDGTTKTGKTKKKKANKQKVSPDPQQ--QQQVKK----RPLR 64119
>gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 26, whole genome shotgun
sequence
Length = 441226
Score = 29.3 bits (64), Expect = 1.5
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Frame = -2
Query: 89 QVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSK 148
+VE + A E K++Q R A + +QE+ +Q +L+A S+++
Sbjct: 235113 RVEQKEAAAEE--KRIQRRSQLQALKAAVTTIQQEKDDEIQS-----SLQAAAQHSQSNI 234955
Query: 149 KLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARW---RPGNSRPSAGGUG 204
++ Q+P ++++ + + P R+S S ARW G + GG G
Sbjct: 234954 RILQRPAAPDTSETNRSVDSRNTPSRASGPSTNVSNSGAGARWVRASRGGDQHQRGGRG 234778
>gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 4, whole genome shotgun
sequence
Length = 1360148
Score = 28.5 bits (62), Expect = 2.6
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 90 VEARSVAMERARKKLQDRHDAA-AREHEERLREQEE 124
VEA +A RARK+ + + DA AR+ ER R +E+
Sbjct: 1159715 VEAADIARNRARKERKRQMDAIYARKRRERERSEED 1159608
Score = 28.1 bits (61), Expect = 3.4
Identities = 23/67 (34%), Positives = 30/67 (44%)
Frame = +1
Query: 138 KAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGGPSNSARWRPGNSR 197
KA + T+ K ++ PD Q H R+ E +P D+ P NS WR G
Sbjct: 388687 KAPGSSLPTAPK-ERAPDDEGRFQRHSTRH-EDRP----DYEPSRSESDNS--WRRGGGG 388842
Query: 198 PSAGGUG 204
PSAG G
Sbjct: 388843 PSAGDRG 388863
Score = 27.7 bits (60), Expect = 4.4
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 124 EQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLG 182
+ +R + + + L TQS S D +P P+ +T H + + + F+PLG
Sbjct: 984830 KSERREDSSSSEKLPTWITQSTISNAFDMRPTPSSSTSFHS*QTQSLVCILPLFFAPLG 985006
>gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 16, whole genome
shotgun sequence
Length = 764225
Score = 28.1 bits (61), Expect = 3.4
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Frame = -1
Query: 63 NIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQ 122
++E +K L +Y+D E +V+M ++K +DR+ A+ E L+
Sbjct: 95549 DLESQLKEL-----SYHDQLEEKIRHSTTQTTVSMIEKQEKAEDRNVETAQRDSEALK-- 95391
Query: 123 EEQKRMQKINDHDAL----KAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSD 177
IN H+A + ++S + P P + + RN +S R+ D
Sbjct: 95390 ------TSINSHEATLHSPREASSRSFLAVATASSPHPLRTS----NRNSQSPSFRNRD 95244
>gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 9, whole genome shotgun
sequence
Length = 1002813
Score = 28.1 bits (61), Expect = 3.4
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 91 EARSVAMERARKKLQDRHDAAAREHEERLREQE--EQKRMQK 130
EAR E RKK + R + A+E E R E E E++R +K
Sbjct: 917504 EARRKEEEEKRKKDEARREREAKEEERRRAEDERMEEERRKK 917379
Score = 27.7 bits (60), Expect = 4.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 141 KTQSKTSKKLDQKPDPNQATQSHIKRNKESKPL 173
+ + T ++L Q+ QAT H + +ESKP+
Sbjct: 920288 RQEENTVRRLTQESKQKQATTDHHRTGRESKPI 920386
>gb|CM000625.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 23, whole genome shotgun
sequence
Length = 512847
Score = 27.7 bits (60), Expect = 4.4
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +1
Query: 113 REHEERLREQEEQKRMQKI--NDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKES 170
+EH + LREQ + +R++ + + + K GK ++ LD P + S ++ S
Sbjct: 282034 KEHVDFLREQTQPRRVEVVWGSPSRSQKVGKAGTEK*SILDHAPFRSPTPNS*VEAGSLS 282213
Query: 171 KPLRSSDFSPLGGGPSNSAR 190
P S L P+ AR
Sbjct: 282214 DPNVSCRSKSLSWWPTKLAR 282273
>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome
shotgun sequence
Length = 976485
Score = 27.7 bits (60), Expect = 4.4
Identities = 26/96 (27%), Positives = 44/96 (45%)
Frame = -1
Query: 89 QVEARSVAMERARKKLQDRHDAAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSK 148
+ E ER R+++Q + ER R +EEQ+ Q+ + A K Q+ +K
Sbjct: 41733 ETEREDKEAERERRRIQQLENLDPEVRAERERVREEQR--QETEERRAKKRQAEQALANK 41560
Query: 149 KLDQKPDPNQATQSHIKRNKESKPLRSSDFSPLGGG 184
+K D +A ++ + E +SS F+ L GG
Sbjct: 41559 --HRKLDKEEARKAQAR--LEYLLQQSSIFAKLQGG 41464
>gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun
sequence
Length = 683011
Score = 27.3 bits (59), Expect = 5.8
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 72 FGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAREHEERLREQEE 124
FGR T + PE ++ + RKKL D+ AR ERL E +
Sbjct: 440418 FGRENTNHFVGNKAYPETLDICQPKYNKLRKKLADQGRKTARWIHERLLESPD 440576
Score = 26.6 bits (57), Expect = 9.8
Identities = 13/64 (20%), Positives = 28/64 (43%)
Frame = +3
Query: 122 QEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDFSPL 181
Q++ +++ + L ++ +++DQ+ TQ H R++ S R+ D
Sbjct: 481539 QDQPIAVRRSSTQSCLDRESIEANVQQQIDQQQKGVAVTQKHQTRHRPSLAERAEDLGSY 481718
Query: 182 GGGP 185
G P
Sbjct: 481719 GSDP 481730
>gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun
sequence
Length = 1098047
Score = 27.3 bits (59), Expect = 5.8
Identities = 22/107 (20%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Frame = -1
Query: 74 RRKTYYDDTENMTPEQVEARSVAMERA---RKKLQDRHDAAAREHEERLREQE-EQKRMQ 129
++ +Y T N +A A ++A +K ++ R+ A++ E R+++ EQKR++
Sbjct: 654371 KKPSYAKPTLNPMFVNPKATLTAAQKAADSKKLVETRNVETAKKKAEAKRQKKIEQKRVE 654192
Query: 130 KINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSS 176
+ A+ QSK+ + + +Q + KR ++++ ++ +
Sbjct: 654191 EEQKRQAVSRDLKQSKSISQEQTRLRKDQDGKDFEKRRRKAEQVKEA 654051
Score = 26.9 bits (58), Expect = 7.5
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +2
Query: 110 AAAREHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKE 169
++ R +++ + + ++ A +A + KT P+ +++ K
Sbjct: 988670 SSGRNNKQLRHSKRNSDSSSRNSNRPAKRANPHKQKTPLSRRSNPNSKPSSRRGNKSTHP 988849
Query: 170 SKPLRSSDFSPLGGG-PSNSARWRPGNS 196
KP ++ ++P P N WRPG S
Sbjct: 988850 YKPPSTTAYNPNKPK*PPNKRAWRPGTS 988933
>gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 27, whole genome shotgun
sequence
Length = 404298
Score = 26.9 bits (58), Expect = 7.5
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Frame = -1
Query: 65 EKSVKNLFGRRKTYYDDTENMTPEQVE---ARSVAMERARKKLQDRHDAAAREHEERLRE 121
+KS RR+ + +N + + + S + RKK + R H+ER R
Sbjct: 111039 KKSKHRKTRRRRRRSSEKDNSVVDDISLSLSDSTSSSARRKKRRQR-------HKER-RR 110884
Query: 122 QEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESK 171
+E+Q +D +L ++ K+ + D +Q H R + +
Sbjct: 110883 KEKQTVHSSTDDEQSLSTADRDRRSRKRRRKDRDDESTSQRHHSRQNKRR 110734
>gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun
sequence
Length = 829358
Score = 26.9 bits (58), Expect = 7.5
Identities = 19/106 (17%), Positives = 43/106 (40%)
Frame = +2
Query: 54 FVAAMFVWTNIEKSVKNLFGRRKTYYDDTENMTPEQVEARSVAMERARKKLQDRHDAAAR 113
F++ + + EK+V+++F + + ARS A++ KKL +A
Sbjct: 806696 FLSHLRAYPTKEKAVRHIFSAKALHLGHV---------ARSFALKEPPKKLGTNSSQSAA 806848
Query: 114 EHEERLREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQA 159
E+ R++ ++ + GK S+ +++ N +
Sbjct: 806849 NQEDDSRKRNGSMAFTIFDEDETAPGGKGYQSKSRSPNKRTKTNDS 806986
>gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun
sequence
Length = 1007773
Score = 26.9 bits (58), Expect = 7.5
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 3/136 (2%)
Frame = -3
Query: 62 TNIEKSVKNLFGRRKTYYDDTEN---MTPEQVEARSVAMERARKKLQDRHDAAAREHEER 118
T E ++ L+ RR+ + N + A VA +KL + D R+ ER
Sbjct: 530570 TLCEAELQELWERRQRRGNRNRNGPATDEDHSTATFVADADELRKLTEEADMDVRDVLER 530391
Query: 119 LREQEEQKRMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSHIKRNKESKPLRSSDF 178
LR + E DH++ T + Q +P + ++ P+R+S
Sbjct: 530390 LRREGEADTTVSDEDHES-------PVTHSRQVQFAEPVRV---------DASPVRTSS- 530262
Query: 179 SPLGGGPSNSARWRPG 194
SP G PS R PG
Sbjct: 530261 SPAGAPPSPLPRSDPG 530214
Score = 26.6 bits (57), Expect = 9.8
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = -1
Query: 105 QDRHDAAAREHEERLREQEEQK-RMQKINDHDALKAGKTQSKTSKKLDQKPDPNQATQSH 163
+D H A E R + + Q+ R K +A + G+T ++ +K DPN
Sbjct: 569803 RDGHYGPASLEESRKKNRRGQRARKAKALAVEARQQGRTLDRSINWRPKKMDPNDHQGPE 569624
Query: 164 IKRNKESKPLRSSDFSPLGGGPSNSARWRP 193
S+P S S P ++A P
Sbjct: 569623 TSIPSRSRPGHQSQHSQPTPTPDDTAHLHP 569534
Database: P.tricornutum/genome.fa
Posted date: Feb 9, 2011 9:02 AM
Number of letters in database: 23,733,684
Number of sequences in database: 31
Lambda K H
0.312 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,128,133
Number of Sequences: 31
Number of extensions: 65283
Number of successful extensions: 407
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 159
length of query: 204
length of database: 7,911,228
effective HSP length: 93
effective length of query: 111
effective length of database: 7,908,345
effective search space: 877826295
effective search space used: 877826295
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)